Post analysis in python code
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Dear supporter,
I run neurostimulation in Sim4LifeLight V 5.0.1.4765 and then, I plot my results by means of following code:
#start of my code
def AnalyzeSimulation(sim):
import s4l_v1.analysis as analysis
import s4l_v1.analysis.neuron_evaluators# Create extractor for a given simulation output file results = sim.Results() inputs = [] for sensor in results.keys(): if "PointSensor" in sensor: sensor_extractor = results[sensor] document.AllAlgorithms.Add(sensor_extractor) sensor_extractor.Update() inputs.append(sensor_extractor["v"]) plot_viewer = analysis.viewers.PlotViewer(inputs=inputs) plot_viewer.Update() document.AllAlgorithms.Add(plot_viewer)
AnalyzeSimulation(simNeuro)
#end of my code
I want to do some post processing on my plotted data, but unfortunately, I do not know how can I access data through python code.
Thanks for your help.
Fariba -
after the line
sensor_extractor.Update()
you can access the data using either:sensor_extractor["v"].Data.GetComponent(0)
(if 1D data)sensor_extractor["v"].Data.Field(0)
(if 3D data)
these return the numpy array holding the raw data. Type
dir(sensor_extractor["v"].Data)
in the Console to get a list of available functions that can be useful for Data objects.