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ZMT zurich med tech

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  4. Implementing on HPC cluster

Implementing on HPC cluster

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  • R Offline
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    renardChien
    wrote on last edited by
    #1

    The documentation shows the simulations can be performed on the HPC cluster, but I cannot find an installation guide. Our cluster is Linux-based and the application is only available in Windows. I expect Python scripting is a possibility. Is there another way to use the Windows software on a Linux HPC, Like with a virtual machine or another technique?

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      suchitkumar
      wrote on last edited by
      #2

      Hi, Were you able to run simulations on the HPC cluster? I am also trying something like this. Please let me know. Thank you.

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        renardChien
        wrote on last edited by
        #3

        I eventually installed the software on a cloud virtual machine. It had a Windows 10 operating system for $3.79 per hour. (Paperspace.com) The workstation had an Intel Xeon E5-2630 v3 processor, 16 virtual cores, 90 GB of RAM, two NVIDIA Ampere A6000 GPUs, each with 48 GB GPU memory, and 2 TB of disk space. By using the Cloud GPU, we were able to substantially improve the computation time (from 200 Mcells/s to 12,000 Mcells/s, about 60X improvement in speed) compared to parallel processing on an 8-core PC. The company has a new H100 GPU workstation at a slightly higher price. It would be interesting to see how much faster it performs.

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          suchitkumar
          wrote on last edited by
          #4

          That's great to hear! Thank you so much for sharing your experience. I'll explore the option of implementing something similar for EM simulation.

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